CeleScope Report

Sample

Sample ID test1
Assay Single-cell tag
Chemistry scopeV2.1.1 (kit V1)
Software Version 1.12.0

Demultiplexing

Raw Reads 25,000
Valid Reads 23,445(93.78%)
Q30 of Barcodes 95.22%
Q30 of UMIs 86.42%

Trimming

Reads with Adapters 23,148(98.73%)
Reads Too Short 40(0.17%)
Reads Written 23,405(99.83%)
Base Pairs Processed 3,516,750
Base Pairs Quality-Trimmed 269,882(7.67%)
Base Pairs Written 1,654,378(47.04%)

Mapping

Reads Mapped 21,591(92.25%)
Reads Unmapped Too Short 775(3.31%)
Reads Unmapped Invalid Linker 0(0.0%)
Reads Unmapped Invalid Barcode 1,039(4.44%)

Cells

Mapped Reads in Cells 4,395(20.36%)
Median UMI per Cell 0.0
Mean UMI per Cell 0.48
Undetermined Cells 6,369(75.19%)
Multiplet Cells 137(1.62%)
SMK0 Cells 519(6.13%)
SMK1 Cells 351(4.14%)
SMK2 Cells 78(0.92%)
SMK3 Cells 1,016(12.0%)

Analysis